1125 lines
35 KiB
Go
1125 lines
35 KiB
Go
// Copyright 2020 The Prometheus Authors
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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package chunks
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import (
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"bufio"
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"bytes"
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"encoding/binary"
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"hash"
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"io"
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"os"
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"path/filepath"
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"strconv"
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"sync"
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"github.com/dennwc/varint"
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"github.com/pkg/errors"
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"github.com/prometheus/client_golang/prometheus"
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"go.uber.org/atomic"
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"golang.org/x/exp/slices"
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"github.com/prometheus/prometheus/tsdb/chunkenc"
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tsdb_errors "github.com/prometheus/prometheus/tsdb/errors"
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"github.com/prometheus/prometheus/tsdb/fileutil"
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)
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// Head chunk file header fields constants.
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const (
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// MagicHeadChunks is 4 bytes at the beginning of a head chunk file.
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MagicHeadChunks = 0x0130BC91
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headChunksFormatV1 = 1
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)
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// ErrChunkDiskMapperClosed returned by any method indicates
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// that the ChunkDiskMapper was closed.
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var ErrChunkDiskMapperClosed = errors.New("ChunkDiskMapper closed")
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const (
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// MintMaxtSize is the size of the mint/maxt for head chunk file and chunks.
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MintMaxtSize = 8
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// SeriesRefSize is the size of series reference on disk.
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SeriesRefSize = 8
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// HeadChunkFileHeaderSize is the total size of the header for a head chunk file.
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HeadChunkFileHeaderSize = SegmentHeaderSize
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// MaxHeadChunkFileSize is the max size of a head chunk file.
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MaxHeadChunkFileSize = 128 * 1024 * 1024 // 128 MiB.
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// CRCSize is the size of crc32 sum on disk.
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CRCSize = 4
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// MaxHeadChunkMetaSize is the max size of an mmapped chunks minus the chunks data.
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// Max because the uvarint size can be smaller.
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MaxHeadChunkMetaSize = SeriesRefSize + 2*MintMaxtSize + ChunkEncodingSize + MaxChunkLengthFieldSize + CRCSize
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// MinWriteBufferSize is the minimum write buffer size allowed.
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MinWriteBufferSize = 64 * 1024 // 64KB.
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// MaxWriteBufferSize is the maximum write buffer size allowed.
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MaxWriteBufferSize = 8 * 1024 * 1024 // 8 MiB.
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// DefaultWriteBufferSize is the default write buffer size.
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DefaultWriteBufferSize = 4 * 1024 * 1024 // 4 MiB.
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// DefaultWriteQueueSize is the default size of the in-memory queue used before flushing chunks to the disk.
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// A value of 0 completely disables this feature.
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DefaultWriteQueueSize = 0
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)
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// ChunkDiskMapperRef represents the location of a head chunk on disk.
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// The upper 4 bytes hold the index of the head chunk file and
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// the lower 4 bytes hold the byte offset in the head chunk file where the chunk starts.
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type ChunkDiskMapperRef uint64
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func newChunkDiskMapperRef(seq, offset uint64) ChunkDiskMapperRef {
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return ChunkDiskMapperRef((seq << 32) | offset)
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}
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func (ref ChunkDiskMapperRef) Unpack() (seq, offset int) {
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seq = int(ref >> 32)
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offset = int((ref << 32) >> 32)
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return seq, offset
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}
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func (ref ChunkDiskMapperRef) GreaterThanOrEqualTo(r ChunkDiskMapperRef) bool {
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s1, o1 := ref.Unpack()
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s2, o2 := r.Unpack()
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return s1 > s2 || (s1 == s2 && o1 >= o2)
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}
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func (ref ChunkDiskMapperRef) GreaterThan(r ChunkDiskMapperRef) bool {
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s1, o1 := ref.Unpack()
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s2, o2 := r.Unpack()
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return s1 > s2 || (s1 == s2 && o1 > o2)
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}
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// CorruptionErr is an error that's returned when corruption is encountered.
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type CorruptionErr struct {
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Dir string
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FileIndex int
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Err error
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}
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func (e *CorruptionErr) Error() string {
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return errors.Wrapf(e.Err, "corruption in head chunk file %s", segmentFile(e.Dir, e.FileIndex)).Error()
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}
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// chunkPos keeps track of the position in the head chunk files.
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// chunkPos is not thread-safe, a lock must be used to protect it.
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type chunkPos struct {
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seq uint64 // Index of chunk file.
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offset uint64 // Offset within chunk file.
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cutFile bool // When true then the next chunk will be written to a new file.
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}
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// getNextChunkRef takes a chunk and returns the chunk reference which will refer to it once it has been written.
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// getNextChunkRef also decides whether a new file should be cut before writing this chunk, and it returns the decision via the second return value.
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// The order of calling getNextChunkRef must be the order in which chunks are written to the disk.
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func (f *chunkPos) getNextChunkRef(chk chunkenc.Chunk) (chkRef ChunkDiskMapperRef, cutFile bool) {
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chkLen := uint64(len(chk.Bytes()))
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bytesToWrite := f.bytesToWriteForChunk(chkLen)
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if f.shouldCutNewFile(bytesToWrite) {
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f.toNewFile()
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f.cutFile = false
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cutFile = true
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}
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chkOffset := f.offset
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f.offset += bytesToWrite
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return newChunkDiskMapperRef(f.seq, chkOffset), cutFile
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}
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// toNewFile updates the seq/offset position to point to the beginning of a new chunk file.
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func (f *chunkPos) toNewFile() {
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f.seq++
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f.offset = SegmentHeaderSize
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}
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// cutFileOnNextChunk triggers that the next chunk will be written in to a new file.
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// Not thread safe, a lock must be held when calling this.
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func (f *chunkPos) cutFileOnNextChunk() {
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f.cutFile = true
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}
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// setSeq sets the sequence number of the head chunk file.
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func (f *chunkPos) setSeq(seq uint64) {
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f.seq = seq
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}
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// shouldCutNewFile returns whether a new file should be cut based on the file size.
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// Not thread safe, a lock must be held when calling this.
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func (f *chunkPos) shouldCutNewFile(bytesToWrite uint64) bool {
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if f.cutFile {
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return true
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}
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return f.offset == 0 || // First head chunk file.
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f.offset+bytesToWrite > MaxHeadChunkFileSize // Exceeds the max head chunk file size.
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}
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// bytesToWriteForChunk returns the number of bytes that will need to be written for the given chunk size,
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// including all meta data before and after the chunk data.
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// Head chunk format: https://github.com/prometheus/prometheus/blob/main/tsdb/docs/format/head_chunks.md#chunk
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func (f *chunkPos) bytesToWriteForChunk(chkLen uint64) uint64 {
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// Headers.
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bytes := uint64(SeriesRefSize) + 2*MintMaxtSize + ChunkEncodingSize
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// Size of chunk length encoded as uvarint.
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bytes += uint64(varint.UvarintSize(chkLen))
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// Chunk length.
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bytes += chkLen
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// crc32.
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bytes += CRCSize
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return bytes
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}
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// ChunkDiskMapper is for writing the Head block chunks to the disk
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// and access chunks via mmapped file.
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type ChunkDiskMapper struct {
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/// Writer.
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dir *os.File
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writeBufferSize int
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curFile *os.File // File being written to.
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curFileSequence int // Index of current open file being appended to. 0 if no file is active.
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curFileOffset atomic.Uint64 // Bytes written in current open file.
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curFileMaxt int64 // Used for the size retention.
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// The values in evtlPos represent the file position which will eventually be
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// reached once the content of the write queue has been fully processed.
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evtlPosMtx sync.Mutex
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evtlPos chunkPos
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byteBuf [MaxHeadChunkMetaSize]byte // Buffer used to write the header of the chunk.
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chkWriter *bufio.Writer // Writer for the current open file.
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crc32 hash.Hash
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writePathMtx sync.Mutex
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/// Reader.
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// The int key in the map is the file number on the disk.
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mmappedChunkFiles map[int]*mmappedChunkFile // Contains the m-mapped files for each chunk file mapped with its index.
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closers map[int]io.Closer // Closers for resources behind the byte slices.
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readPathMtx sync.RWMutex // Mutex used to protect the above 2 maps.
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pool chunkenc.Pool // This is used when fetching a chunk from the disk to allocate a chunk.
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// Writer and Reader.
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// We flush chunks to disk in batches. Hence, we store them in this buffer
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// from which chunks are served till they are flushed and are ready for m-mapping.
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chunkBuffer *chunkBuffer
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// Whether the maxt field is set for all mmapped chunk files tracked within the mmappedChunkFiles map.
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// This is done after iterating through all the chunks in those files using the IterateAllChunks method.
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fileMaxtSet bool
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writeQueue *chunkWriteQueue
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closed bool
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}
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// mmappedChunkFile provides mmapp access to an entire head chunks file that holds many chunks.
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type mmappedChunkFile struct {
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byteSlice ByteSlice
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maxt int64 // Max timestamp among all of this file's chunks.
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}
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// NewChunkDiskMapper returns a new ChunkDiskMapper against the given directory
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// using the default head chunk file duration.
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// NOTE: 'IterateAllChunks' method needs to be called at least once after creating ChunkDiskMapper
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// to set the maxt of all the file.
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func NewChunkDiskMapper(reg prometheus.Registerer, dir string, pool chunkenc.Pool, writeBufferSize, writeQueueSize int) (*ChunkDiskMapper, error) {
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// Validate write buffer size.
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if writeBufferSize < MinWriteBufferSize || writeBufferSize > MaxWriteBufferSize {
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return nil, errors.Errorf("ChunkDiskMapper write buffer size should be between %d and %d (actual: %d)", MinWriteBufferSize, MaxWriteBufferSize, writeBufferSize)
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}
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if writeBufferSize%1024 != 0 {
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return nil, errors.Errorf("ChunkDiskMapper write buffer size should be a multiple of 1024 (actual: %d)", writeBufferSize)
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}
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if err := os.MkdirAll(dir, 0o777); err != nil {
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return nil, err
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}
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dirFile, err := fileutil.OpenDir(dir)
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if err != nil {
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return nil, err
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}
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m := &ChunkDiskMapper{
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dir: dirFile,
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pool: pool,
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writeBufferSize: writeBufferSize,
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crc32: newCRC32(),
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chunkBuffer: newChunkBuffer(),
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}
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if writeQueueSize > 0 {
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m.writeQueue = newChunkWriteQueue(reg, writeQueueSize, m.writeChunk)
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}
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if m.pool == nil {
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m.pool = chunkenc.NewPool()
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}
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return m, m.openMMapFiles()
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}
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// Chunk encodings for out-of-order chunks.
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// These encodings must be only used by the Head block for its internal bookkeeping.
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const (
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OutOfOrderMask = uint8(0b10000000)
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)
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func (cdm *ChunkDiskMapper) ApplyOutOfOrderMask(sourceEncoding chunkenc.Encoding) chunkenc.Encoding {
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enc := uint8(sourceEncoding) | OutOfOrderMask
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return chunkenc.Encoding(enc)
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}
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func (cdm *ChunkDiskMapper) IsOutOfOrderChunk(e chunkenc.Encoding) bool {
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return (uint8(e) & OutOfOrderMask) != 0
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}
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func (cdm *ChunkDiskMapper) RemoveMasks(sourceEncoding chunkenc.Encoding) chunkenc.Encoding {
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restored := uint8(sourceEncoding) & (^OutOfOrderMask)
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return chunkenc.Encoding(restored)
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}
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// openMMapFiles opens all files within dir for mmapping.
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func (cdm *ChunkDiskMapper) openMMapFiles() (returnErr error) {
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cdm.mmappedChunkFiles = map[int]*mmappedChunkFile{}
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cdm.closers = map[int]io.Closer{}
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defer func() {
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if returnErr != nil {
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returnErr = tsdb_errors.NewMulti(returnErr, closeAllFromMap(cdm.closers)).Err()
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cdm.mmappedChunkFiles = nil
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cdm.closers = nil
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}
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}()
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files, err := listChunkFiles(cdm.dir.Name())
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if err != nil {
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return err
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}
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files, err = repairLastChunkFile(files)
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if err != nil {
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return err
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}
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chkFileIndices := make([]int, 0, len(files))
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for seq, fn := range files {
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f, err := fileutil.OpenMmapFile(fn)
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if err != nil {
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return errors.Wrapf(err, "mmap files, file: %s", fn)
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}
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cdm.closers[seq] = f
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cdm.mmappedChunkFiles[seq] = &mmappedChunkFile{byteSlice: realByteSlice(f.Bytes())}
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chkFileIndices = append(chkFileIndices, seq)
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}
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// Check for gaps in the files.
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slices.Sort(chkFileIndices)
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if len(chkFileIndices) == 0 {
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return nil
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}
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lastSeq := chkFileIndices[0]
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for _, seq := range chkFileIndices[1:] {
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if seq != lastSeq+1 {
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return errors.Errorf("found unsequential head chunk files %s (index: %d) and %s (index: %d)", files[lastSeq], lastSeq, files[seq], seq)
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}
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lastSeq = seq
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}
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for i, b := range cdm.mmappedChunkFiles {
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if b.byteSlice.Len() < HeadChunkFileHeaderSize {
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return errors.Wrapf(errInvalidSize, "%s: invalid head chunk file header", files[i])
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}
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// Verify magic number.
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if m := binary.BigEndian.Uint32(b.byteSlice.Range(0, MagicChunksSize)); m != MagicHeadChunks {
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return errors.Errorf("%s: invalid magic number %x", files[i], m)
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}
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// Verify chunk format version.
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if v := int(b.byteSlice.Range(MagicChunksSize, MagicChunksSize+ChunksFormatVersionSize)[0]); v != chunksFormatV1 {
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return errors.Errorf("%s: invalid chunk format version %d", files[i], v)
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}
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}
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cdm.evtlPos.setSeq(uint64(lastSeq))
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return nil
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}
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func listChunkFiles(dir string) (map[int]string, error) {
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files, err := os.ReadDir(dir)
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if err != nil {
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return nil, err
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}
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res := map[int]string{}
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for _, fi := range files {
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seq, err := strconv.ParseUint(fi.Name(), 10, 64)
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if err != nil {
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continue
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}
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res[int(seq)] = filepath.Join(dir, fi.Name())
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}
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return res, nil
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}
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// repairLastChunkFile deletes the last file if it's empty.
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// Because we don't fsync when creating these files, we could end
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// up with an empty file at the end during an abrupt shutdown.
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func repairLastChunkFile(files map[int]string) (_ map[int]string, returnErr error) {
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lastFile := -1
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for seq := range files {
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if seq > lastFile {
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lastFile = seq
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}
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}
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if lastFile <= 0 {
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return files, nil
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}
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f, err := os.Open(files[lastFile])
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if err != nil {
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return files, errors.Wrap(err, "open file during last head chunk file repair")
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}
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buf := make([]byte, MagicChunksSize)
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size, err := f.Read(buf)
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if err != nil && err != io.EOF {
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return files, errors.Wrap(err, "failed to read magic number during last head chunk file repair")
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}
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if err := f.Close(); err != nil {
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return files, errors.Wrap(err, "close file during last head chunk file repair")
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}
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// We either don't have enough bytes for the magic number or the magic number is 0.
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// NOTE: we should not check for wrong magic number here because that error
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// needs to be sent up the function called (already done elsewhere)
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// for proper repair mechanism to happen in the Head.
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if size < MagicChunksSize || binary.BigEndian.Uint32(buf) == 0 {
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// Corrupt file, hence remove it.
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if err := os.RemoveAll(files[lastFile]); err != nil {
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return files, errors.Wrap(err, "delete corrupted, empty head chunk file during last file repair")
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}
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delete(files, lastFile)
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}
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return files, nil
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}
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// WriteChunk writes the chunk to the disk.
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// The returned chunk ref is the reference from where the chunk encoding starts for the chunk.
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func (cdm *ChunkDiskMapper) WriteChunk(seriesRef HeadSeriesRef, mint, maxt int64, chk chunkenc.Chunk, isOOO bool, callback func(err error)) (chkRef ChunkDiskMapperRef) {
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// cdm.evtlPosMtx must be held to serialize the calls to cdm.evtlPos.getNextChunkRef() and the writing of the chunk (either with or without queue).
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cdm.evtlPosMtx.Lock()
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defer cdm.evtlPosMtx.Unlock()
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ref, cutFile := cdm.evtlPos.getNextChunkRef(chk)
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if cdm.writeQueue != nil {
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return cdm.writeChunkViaQueue(ref, isOOO, cutFile, seriesRef, mint, maxt, chk, callback)
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}
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err := cdm.writeChunk(seriesRef, mint, maxt, chk, ref, isOOO, cutFile)
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if callback != nil {
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callback(err)
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}
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return ref
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}
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func (cdm *ChunkDiskMapper) writeChunkViaQueue(ref ChunkDiskMapperRef, isOOO, cutFile bool, seriesRef HeadSeriesRef, mint, maxt int64, chk chunkenc.Chunk, callback func(err error)) (chkRef ChunkDiskMapperRef) {
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var err error
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if callback != nil {
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defer func() {
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if err != nil {
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callback(err)
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}
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}()
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}
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err = cdm.writeQueue.addJob(chunkWriteJob{
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cutFile: cutFile,
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seriesRef: seriesRef,
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mint: mint,
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maxt: maxt,
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chk: chk,
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ref: ref,
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isOOO: isOOO,
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callback: callback,
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})
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return ref
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}
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func (cdm *ChunkDiskMapper) writeChunk(seriesRef HeadSeriesRef, mint, maxt int64, chk chunkenc.Chunk, ref ChunkDiskMapperRef, isOOO, cutFile bool) (err error) {
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cdm.writePathMtx.Lock()
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defer cdm.writePathMtx.Unlock()
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if cdm.closed {
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return ErrChunkDiskMapperClosed
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}
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if cutFile {
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err := cdm.cutAndExpectRef(ref)
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if err != nil {
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return err
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}
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}
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// if len(chk.Bytes())+MaxHeadChunkMetaSize >= writeBufferSize, it means that chunk >= the buffer size;
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// so no need to flush here, as we have to flush at the end (to not keep partial chunks in buffer).
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if len(chk.Bytes())+MaxHeadChunkMetaSize < cdm.writeBufferSize && cdm.chkWriter.Available() < MaxHeadChunkMetaSize+len(chk.Bytes()) {
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if err := cdm.flushBuffer(); err != nil {
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return err
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}
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|
}
|
|
|
|
cdm.crc32.Reset()
|
|
bytesWritten := 0
|
|
|
|
binary.BigEndian.PutUint64(cdm.byteBuf[bytesWritten:], uint64(seriesRef))
|
|
bytesWritten += SeriesRefSize
|
|
binary.BigEndian.PutUint64(cdm.byteBuf[bytesWritten:], uint64(mint))
|
|
bytesWritten += MintMaxtSize
|
|
binary.BigEndian.PutUint64(cdm.byteBuf[bytesWritten:], uint64(maxt))
|
|
bytesWritten += MintMaxtSize
|
|
enc := chk.Encoding()
|
|
if isOOO {
|
|
enc = cdm.ApplyOutOfOrderMask(enc)
|
|
}
|
|
cdm.byteBuf[bytesWritten] = byte(enc)
|
|
bytesWritten += ChunkEncodingSize
|
|
n := binary.PutUvarint(cdm.byteBuf[bytesWritten:], uint64(len(chk.Bytes())))
|
|
bytesWritten += n
|
|
|
|
if err := cdm.writeAndAppendToCRC32(cdm.byteBuf[:bytesWritten]); err != nil {
|
|
return err
|
|
}
|
|
if err := cdm.writeAndAppendToCRC32(chk.Bytes()); err != nil {
|
|
return err
|
|
}
|
|
if err := cdm.writeCRC32(); err != nil {
|
|
return err
|
|
}
|
|
|
|
if maxt > cdm.curFileMaxt {
|
|
cdm.curFileMaxt = maxt
|
|
}
|
|
|
|
cdm.chunkBuffer.put(ref, chk)
|
|
|
|
if len(chk.Bytes())+MaxHeadChunkMetaSize >= cdm.writeBufferSize {
|
|
// The chunk was bigger than the buffer itself.
|
|
// Flushing to not keep partial chunks in buffer.
|
|
if err := cdm.flushBuffer(); err != nil {
|
|
return err
|
|
}
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// CutNewFile makes that a new file will be created the next time a chunk is written.
|
|
func (cdm *ChunkDiskMapper) CutNewFile() {
|
|
cdm.evtlPosMtx.Lock()
|
|
defer cdm.evtlPosMtx.Unlock()
|
|
|
|
cdm.evtlPos.cutFileOnNextChunk()
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) IsQueueEmpty() bool {
|
|
if cdm.writeQueue == nil {
|
|
return true
|
|
}
|
|
|
|
return cdm.writeQueue.queueIsEmpty()
|
|
}
|
|
|
|
// cutAndExpectRef creates a new m-mapped file.
|
|
// The write lock should be held before calling this.
|
|
// It ensures that the position in the new file matches the given chunk reference, if not then it errors.
|
|
func (cdm *ChunkDiskMapper) cutAndExpectRef(chkRef ChunkDiskMapperRef) (err error) {
|
|
seq, offset, err := cdm.cut()
|
|
if err != nil {
|
|
return err
|
|
}
|
|
|
|
if expSeq, expOffset := chkRef.Unpack(); seq != expSeq || offset != expOffset {
|
|
return errors.Errorf("expected newly cut file to have sequence:offset %d:%d, got %d:%d", expSeq, expOffset, seq, offset)
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// cut creates a new m-mapped file. The write lock should be held before calling this.
|
|
// It returns the file sequence and the offset in that file to start writing chunks.
|
|
func (cdm *ChunkDiskMapper) cut() (seq, offset int, returnErr error) {
|
|
// Sync current tail to disk and close.
|
|
if err := cdm.finalizeCurFile(); err != nil {
|
|
return 0, 0, err
|
|
}
|
|
|
|
offset, newFile, seq, err := cutSegmentFile(cdm.dir, MagicHeadChunks, headChunksFormatV1, HeadChunkFilePreallocationSize)
|
|
if err != nil {
|
|
return 0, 0, err
|
|
}
|
|
|
|
defer func() {
|
|
// The file should not be closed if there is no error,
|
|
// its kept open in the ChunkDiskMapper.
|
|
if returnErr != nil {
|
|
returnErr = tsdb_errors.NewMulti(returnErr, newFile.Close()).Err()
|
|
}
|
|
}()
|
|
|
|
cdm.curFileOffset.Store(uint64(offset))
|
|
|
|
if cdm.curFile != nil {
|
|
cdm.readPathMtx.Lock()
|
|
cdm.mmappedChunkFiles[cdm.curFileSequence].maxt = cdm.curFileMaxt
|
|
cdm.readPathMtx.Unlock()
|
|
}
|
|
|
|
mmapFile, err := fileutil.OpenMmapFileWithSize(newFile.Name(), MaxHeadChunkFileSize)
|
|
if err != nil {
|
|
return 0, 0, err
|
|
}
|
|
|
|
cdm.readPathMtx.Lock()
|
|
cdm.curFileSequence = seq
|
|
cdm.curFile = newFile
|
|
if cdm.chkWriter != nil {
|
|
cdm.chkWriter.Reset(newFile)
|
|
} else {
|
|
cdm.chkWriter = bufio.NewWriterSize(newFile, cdm.writeBufferSize)
|
|
}
|
|
|
|
cdm.closers[cdm.curFileSequence] = mmapFile
|
|
cdm.mmappedChunkFiles[cdm.curFileSequence] = &mmappedChunkFile{byteSlice: realByteSlice(mmapFile.Bytes())}
|
|
cdm.readPathMtx.Unlock()
|
|
|
|
cdm.curFileMaxt = 0
|
|
|
|
return seq, offset, nil
|
|
}
|
|
|
|
// finalizeCurFile writes all pending data to the current tail file,
|
|
// truncates its size, and closes it.
|
|
func (cdm *ChunkDiskMapper) finalizeCurFile() error {
|
|
if cdm.curFile == nil {
|
|
return nil
|
|
}
|
|
|
|
if err := cdm.flushBuffer(); err != nil {
|
|
return err
|
|
}
|
|
|
|
if err := cdm.curFile.Sync(); err != nil {
|
|
return err
|
|
}
|
|
|
|
return cdm.curFile.Close()
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) write(b []byte) error {
|
|
n, err := cdm.chkWriter.Write(b)
|
|
cdm.curFileOffset.Add(uint64(n))
|
|
return err
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) writeAndAppendToCRC32(b []byte) error {
|
|
if err := cdm.write(b); err != nil {
|
|
return err
|
|
}
|
|
_, err := cdm.crc32.Write(b)
|
|
return err
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) writeCRC32() error {
|
|
return cdm.write(cdm.crc32.Sum(cdm.byteBuf[:0]))
|
|
}
|
|
|
|
// flushBuffer flushes the current in-memory chunks.
|
|
// Assumes that writePathMtx is _write_ locked before calling this method.
|
|
func (cdm *ChunkDiskMapper) flushBuffer() error {
|
|
if err := cdm.chkWriter.Flush(); err != nil {
|
|
return err
|
|
}
|
|
cdm.chunkBuffer.clear()
|
|
return nil
|
|
}
|
|
|
|
// Chunk returns a chunk from a given reference.
|
|
func (cdm *ChunkDiskMapper) Chunk(ref ChunkDiskMapperRef) (chunkenc.Chunk, error) {
|
|
cdm.readPathMtx.RLock()
|
|
// We hold this read lock for the entire duration because if Close()
|
|
// is called, the data in the byte slice will get corrupted as the mmapped
|
|
// file will be closed.
|
|
defer cdm.readPathMtx.RUnlock()
|
|
|
|
if cdm.closed {
|
|
return nil, ErrChunkDiskMapperClosed
|
|
}
|
|
|
|
if cdm.writeQueue != nil {
|
|
chunk := cdm.writeQueue.get(ref)
|
|
if chunk != nil {
|
|
return chunk, nil
|
|
}
|
|
}
|
|
|
|
sgmIndex, chkStart := ref.Unpack()
|
|
// We skip the series ref and the mint/maxt beforehand.
|
|
chkStart += SeriesRefSize + (2 * MintMaxtSize)
|
|
chkCRC32 := newCRC32()
|
|
|
|
// If it is the current open file, then the chunks can be in the buffer too.
|
|
if sgmIndex == cdm.curFileSequence {
|
|
chunk := cdm.chunkBuffer.get(ref)
|
|
if chunk != nil {
|
|
return chunk, nil
|
|
}
|
|
}
|
|
|
|
mmapFile, ok := cdm.mmappedChunkFiles[sgmIndex]
|
|
if !ok {
|
|
if sgmIndex > cdm.curFileSequence {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: -1,
|
|
Err: errors.Errorf("head chunk file index %d more than current open file", sgmIndex),
|
|
}
|
|
}
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("head chunk file index %d does not exist on disk", sgmIndex),
|
|
}
|
|
}
|
|
|
|
if chkStart+MaxChunkLengthFieldSize > mmapFile.byteSlice.Len() {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the chunk size data field - required:%v, available:%v", chkStart+MaxChunkLengthFieldSize, mmapFile.byteSlice.Len()),
|
|
}
|
|
}
|
|
|
|
// Encoding.
|
|
chkEnc := mmapFile.byteSlice.Range(chkStart, chkStart+ChunkEncodingSize)[0]
|
|
sourceChkEnc := chunkenc.Encoding(chkEnc)
|
|
// Extract the encoding from the byte. ChunkDiskMapper uses only the last 7 bits for the encoding.
|
|
chkEnc = byte(cdm.RemoveMasks(sourceChkEnc))
|
|
// Data length.
|
|
// With the minimum chunk length this should never cause us reading
|
|
// over the end of the slice.
|
|
chkDataLenStart := chkStart + ChunkEncodingSize
|
|
c := mmapFile.byteSlice.Range(chkDataLenStart, chkDataLenStart+MaxChunkLengthFieldSize)
|
|
chkDataLen, n := binary.Uvarint(c)
|
|
if n <= 0 {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("reading chunk length failed with %d", n),
|
|
}
|
|
}
|
|
|
|
// Verify the chunk data end.
|
|
chkDataEnd := chkDataLenStart + n + int(chkDataLen)
|
|
if chkDataEnd > mmapFile.byteSlice.Len() {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the chunk - required:%v, available:%v", chkDataEnd, mmapFile.byteSlice.Len()),
|
|
}
|
|
}
|
|
|
|
// Check the CRC.
|
|
sum := mmapFile.byteSlice.Range(chkDataEnd, chkDataEnd+CRCSize)
|
|
if _, err := chkCRC32.Write(mmapFile.byteSlice.Range(chkStart-(SeriesRefSize+2*MintMaxtSize), chkDataEnd)); err != nil {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: err,
|
|
}
|
|
}
|
|
if act := chkCRC32.Sum(nil); !bytes.Equal(act, sum) {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: errors.Errorf("checksum mismatch expected:%x, actual:%x", sum, act),
|
|
}
|
|
}
|
|
|
|
// The chunk data itself.
|
|
chkData := mmapFile.byteSlice.Range(chkDataEnd-int(chkDataLen), chkDataEnd)
|
|
|
|
// Make a copy of the chunk data to prevent a panic occurring because the returned
|
|
// chunk data slice references an mmap-ed file which could be closed after the
|
|
// function returns but while the chunk is still in use.
|
|
chkDataCopy := make([]byte, len(chkData))
|
|
copy(chkDataCopy, chkData)
|
|
|
|
chk, err := cdm.pool.Get(chunkenc.Encoding(chkEnc), chkDataCopy)
|
|
if err != nil {
|
|
return nil, &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: sgmIndex,
|
|
Err: err,
|
|
}
|
|
}
|
|
return chk, nil
|
|
}
|
|
|
|
// IterateAllChunks iterates all mmappedChunkFiles (in order of head chunk file name/number) and all the chunks within it
|
|
// and runs the provided function with information about each chunk. It returns on the first error encountered.
|
|
// NOTE: This method needs to be called at least once after creating ChunkDiskMapper
|
|
// to set the maxt of all the file.
|
|
func (cdm *ChunkDiskMapper) IterateAllChunks(f func(seriesRef HeadSeriesRef, chunkRef ChunkDiskMapperRef, mint, maxt int64, numSamples uint16, encoding chunkenc.Encoding, isOOO bool) error) (err error) {
|
|
cdm.writePathMtx.Lock()
|
|
defer cdm.writePathMtx.Unlock()
|
|
|
|
defer func() {
|
|
cdm.fileMaxtSet = true
|
|
}()
|
|
|
|
chkCRC32 := newCRC32()
|
|
|
|
// Iterate files in ascending order.
|
|
segIDs := make([]int, 0, len(cdm.mmappedChunkFiles))
|
|
for seg := range cdm.mmappedChunkFiles {
|
|
segIDs = append(segIDs, seg)
|
|
}
|
|
slices.Sort(segIDs)
|
|
for _, segID := range segIDs {
|
|
mmapFile := cdm.mmappedChunkFiles[segID]
|
|
fileEnd := mmapFile.byteSlice.Len()
|
|
if segID == cdm.curFileSequence {
|
|
fileEnd = int(cdm.curFileSize())
|
|
}
|
|
idx := HeadChunkFileHeaderSize
|
|
for idx < fileEnd {
|
|
if fileEnd-idx < MaxHeadChunkMetaSize {
|
|
// Check for all 0s which marks the end of the file.
|
|
allZeros := true
|
|
for _, b := range mmapFile.byteSlice.Range(idx, fileEnd) {
|
|
if b != byte(0) {
|
|
allZeros = false
|
|
break
|
|
}
|
|
}
|
|
if allZeros {
|
|
// End of segment chunk file content.
|
|
break
|
|
}
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("head chunk file has some unread data, but doesn't include enough bytes to read the chunk header"+
|
|
" - required:%v, available:%v, file:%d", idx+MaxHeadChunkMetaSize, fileEnd, segID),
|
|
}
|
|
}
|
|
chkCRC32.Reset()
|
|
chunkRef := newChunkDiskMapperRef(uint64(segID), uint64(idx))
|
|
|
|
startIdx := idx
|
|
seriesRef := HeadSeriesRef(binary.BigEndian.Uint64(mmapFile.byteSlice.Range(idx, idx+SeriesRefSize)))
|
|
idx += SeriesRefSize
|
|
mint := int64(binary.BigEndian.Uint64(mmapFile.byteSlice.Range(idx, idx+MintMaxtSize)))
|
|
idx += MintMaxtSize
|
|
maxt := int64(binary.BigEndian.Uint64(mmapFile.byteSlice.Range(idx, idx+MintMaxtSize)))
|
|
idx += MintMaxtSize
|
|
|
|
// We preallocate file to help with m-mapping (especially windows systems).
|
|
// As series ref always starts from 1, we assume it being 0 to be the end of the actual file data.
|
|
// We are not considering possible file corruption that can cause it to be 0.
|
|
// Additionally we are checking mint and maxt just to be sure.
|
|
if seriesRef == 0 && mint == 0 && maxt == 0 {
|
|
break
|
|
}
|
|
|
|
chkEnc := chunkenc.Encoding(mmapFile.byteSlice.Range(idx, idx+ChunkEncodingSize)[0])
|
|
idx += ChunkEncodingSize
|
|
dataLen, n := binary.Uvarint(mmapFile.byteSlice.Range(idx, idx+MaxChunkLengthFieldSize))
|
|
idx += n
|
|
|
|
numSamples := binary.BigEndian.Uint16(mmapFile.byteSlice.Range(idx, idx+2))
|
|
idx += int(dataLen) // Skip the data.
|
|
|
|
// In the beginning we only checked for the chunk meta size.
|
|
// Now that we have added the chunk data length, we check for sufficient bytes again.
|
|
if idx+CRCSize > fileEnd {
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the chunk header - required:%v, available:%v, file:%d", idx+CRCSize, fileEnd, segID),
|
|
}
|
|
}
|
|
|
|
// Check CRC.
|
|
sum := mmapFile.byteSlice.Range(idx, idx+CRCSize)
|
|
if _, err := chkCRC32.Write(mmapFile.byteSlice.Range(startIdx, idx)); err != nil {
|
|
return err
|
|
}
|
|
if act := chkCRC32.Sum(nil); !bytes.Equal(act, sum) {
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("checksum mismatch expected:%x, actual:%x", sum, act),
|
|
}
|
|
}
|
|
idx += CRCSize
|
|
|
|
if maxt > mmapFile.maxt {
|
|
mmapFile.maxt = maxt
|
|
}
|
|
isOOO := cdm.IsOutOfOrderChunk(chkEnc)
|
|
// Extract the encoding from the byte. ChunkDiskMapper uses only the last 7 bits for the encoding.
|
|
chkEnc = cdm.RemoveMasks(chkEnc)
|
|
if err := f(seriesRef, chunkRef, mint, maxt, numSamples, chkEnc, isOOO); err != nil {
|
|
if cerr, ok := err.(*CorruptionErr); ok {
|
|
cerr.Dir = cdm.dir.Name()
|
|
cerr.FileIndex = segID
|
|
return cerr
|
|
}
|
|
return err
|
|
}
|
|
}
|
|
|
|
if idx > fileEnd {
|
|
// It should be equal to the slice length.
|
|
return &CorruptionErr{
|
|
Dir: cdm.dir.Name(),
|
|
FileIndex: segID,
|
|
Err: errors.Errorf("head chunk file doesn't include enough bytes to read the last chunk data - required:%v, available:%v, file:%d", idx, fileEnd, segID),
|
|
}
|
|
}
|
|
}
|
|
|
|
return nil
|
|
}
|
|
|
|
// Truncate deletes the head chunk files whose file number is less than given fileNo.
|
|
func (cdm *ChunkDiskMapper) Truncate(fileNo uint32) error {
|
|
cdm.readPathMtx.RLock()
|
|
|
|
// Sort the file indices, else if files deletion fails in between,
|
|
// it can lead to unsequential files as the map is not sorted.
|
|
chkFileIndices := make([]int, 0, len(cdm.mmappedChunkFiles))
|
|
for seq := range cdm.mmappedChunkFiles {
|
|
chkFileIndices = append(chkFileIndices, seq)
|
|
}
|
|
slices.Sort(chkFileIndices)
|
|
|
|
var removedFiles []int
|
|
for _, seq := range chkFileIndices {
|
|
if seq == cdm.curFileSequence || uint32(seq) >= fileNo {
|
|
break
|
|
}
|
|
removedFiles = append(removedFiles, seq)
|
|
}
|
|
cdm.readPathMtx.RUnlock()
|
|
|
|
errs := tsdb_errors.NewMulti()
|
|
// Cut a new file only if the current file has some chunks.
|
|
if cdm.curFileSize() > HeadChunkFileHeaderSize {
|
|
// There is a known race condition here because between the check of curFileSize() and the call to CutNewFile()
|
|
// a new file could already be cut, this is acceptable because it will simply result in an empty file which
|
|
// won't do any harm.
|
|
cdm.CutNewFile()
|
|
}
|
|
pendingDeletes, err := cdm.deleteFiles(removedFiles)
|
|
errs.Add(err)
|
|
|
|
if len(chkFileIndices) == len(removedFiles) {
|
|
// All files were deleted. Reset the current sequence.
|
|
cdm.evtlPosMtx.Lock()
|
|
|
|
// We can safely reset the sequence only if the write queue is empty. If it's not empty,
|
|
// then there may be a job in the queue that will create a new segment file with an ID
|
|
// generated before the sequence reset.
|
|
//
|
|
// The queueIsEmpty() function must be called while holding the cdm.evtlPosMtx to avoid
|
|
// a race condition with WriteChunk().
|
|
if cdm.writeQueue == nil || cdm.writeQueue.queueIsEmpty() {
|
|
if err == nil {
|
|
cdm.evtlPos.setSeq(0)
|
|
} else {
|
|
// In case of error, set it to the last file number on the disk that was not deleted.
|
|
cdm.evtlPos.setSeq(uint64(pendingDeletes[len(pendingDeletes)-1]))
|
|
}
|
|
}
|
|
|
|
cdm.evtlPosMtx.Unlock()
|
|
}
|
|
|
|
return errs.Err()
|
|
}
|
|
|
|
// deleteFiles deletes the given file sequences in order of the sequence.
|
|
// In case of an error, it returns the sorted file sequences that were not deleted from the _disk_.
|
|
func (cdm *ChunkDiskMapper) deleteFiles(removedFiles []int) ([]int, error) {
|
|
slices.Sort(removedFiles) // To delete them in order.
|
|
cdm.readPathMtx.Lock()
|
|
for _, seq := range removedFiles {
|
|
if err := cdm.closers[seq].Close(); err != nil {
|
|
cdm.readPathMtx.Unlock()
|
|
return removedFiles, err
|
|
}
|
|
delete(cdm.mmappedChunkFiles, seq)
|
|
delete(cdm.closers, seq)
|
|
}
|
|
cdm.readPathMtx.Unlock()
|
|
|
|
// We actually delete the files separately to not block the readPathMtx for long.
|
|
for i, seq := range removedFiles {
|
|
if err := os.Remove(segmentFile(cdm.dir.Name(), seq)); err != nil {
|
|
return removedFiles[i:], err
|
|
}
|
|
}
|
|
|
|
return nil, nil
|
|
}
|
|
|
|
// DeleteCorrupted deletes all the head chunk files after the one which had the corruption
|
|
// (including the corrupt file).
|
|
func (cdm *ChunkDiskMapper) DeleteCorrupted(originalErr error) error {
|
|
err := errors.Cause(originalErr) // So that we can pick up errors even if wrapped.
|
|
cerr, ok := err.(*CorruptionErr)
|
|
if !ok {
|
|
return errors.Wrap(originalErr, "cannot handle error")
|
|
}
|
|
|
|
// Delete all the head chunk files following the corrupt head chunk file.
|
|
segs := []int{}
|
|
cdm.readPathMtx.RLock()
|
|
lastSeq := 0
|
|
for seg := range cdm.mmappedChunkFiles {
|
|
switch {
|
|
case seg >= cerr.FileIndex:
|
|
segs = append(segs, seg)
|
|
case seg > lastSeq:
|
|
lastSeq = seg
|
|
}
|
|
}
|
|
cdm.readPathMtx.RUnlock()
|
|
|
|
pendingDeletes, err := cdm.deleteFiles(segs)
|
|
cdm.evtlPosMtx.Lock()
|
|
if err == nil {
|
|
cdm.evtlPos.setSeq(uint64(lastSeq))
|
|
} else {
|
|
// In case of error, set it to the last file number on the disk that was not deleted.
|
|
cdm.evtlPos.setSeq(uint64(pendingDeletes[len(pendingDeletes)-1]))
|
|
}
|
|
cdm.evtlPosMtx.Unlock()
|
|
|
|
return err
|
|
}
|
|
|
|
// Size returns the size of the chunk files.
|
|
func (cdm *ChunkDiskMapper) Size() (int64, error) {
|
|
return fileutil.DirSize(cdm.dir.Name())
|
|
}
|
|
|
|
func (cdm *ChunkDiskMapper) curFileSize() uint64 {
|
|
return cdm.curFileOffset.Load()
|
|
}
|
|
|
|
// Close closes all the open files in ChunkDiskMapper.
|
|
// It is not longer safe to access chunks from this struct after calling Close.
|
|
func (cdm *ChunkDiskMapper) Close() error {
|
|
// Locking the eventual position lock blocks WriteChunk()
|
|
cdm.evtlPosMtx.Lock()
|
|
defer cdm.evtlPosMtx.Unlock()
|
|
|
|
if cdm.writeQueue != nil {
|
|
cdm.writeQueue.stop()
|
|
}
|
|
|
|
// 'WriteChunk' locks writePathMtx first and then readPathMtx for cutting head chunk file.
|
|
// The lock order should not be reversed here else it can cause deadlocks.
|
|
cdm.writePathMtx.Lock()
|
|
defer cdm.writePathMtx.Unlock()
|
|
cdm.readPathMtx.Lock()
|
|
defer cdm.readPathMtx.Unlock()
|
|
|
|
if cdm.closed {
|
|
return nil
|
|
}
|
|
cdm.closed = true
|
|
|
|
errs := tsdb_errors.NewMulti(
|
|
closeAllFromMap(cdm.closers),
|
|
cdm.finalizeCurFile(),
|
|
cdm.dir.Close(),
|
|
)
|
|
cdm.mmappedChunkFiles = map[int]*mmappedChunkFile{}
|
|
cdm.closers = map[int]io.Closer{}
|
|
|
|
return errs.Err()
|
|
}
|
|
|
|
func closeAllFromMap(cs map[int]io.Closer) error {
|
|
errs := tsdb_errors.NewMulti()
|
|
for _, c := range cs {
|
|
errs.Add(c.Close())
|
|
}
|
|
return errs.Err()
|
|
}
|
|
|
|
const inBufferShards = 128 // 128 is a randomly chosen number.
|
|
|
|
// chunkBuffer is a thread safe lookup table for chunks by their ref.
|
|
type chunkBuffer struct {
|
|
inBufferChunks [inBufferShards]map[ChunkDiskMapperRef]chunkenc.Chunk
|
|
inBufferChunksMtxs [inBufferShards]sync.RWMutex
|
|
}
|
|
|
|
func newChunkBuffer() *chunkBuffer {
|
|
cb := &chunkBuffer{}
|
|
for i := 0; i < inBufferShards; i++ {
|
|
cb.inBufferChunks[i] = make(map[ChunkDiskMapperRef]chunkenc.Chunk)
|
|
}
|
|
return cb
|
|
}
|
|
|
|
func (cb *chunkBuffer) put(ref ChunkDiskMapperRef, chk chunkenc.Chunk) {
|
|
shardIdx := ref % inBufferShards
|
|
|
|
cb.inBufferChunksMtxs[shardIdx].Lock()
|
|
cb.inBufferChunks[shardIdx][ref] = chk
|
|
cb.inBufferChunksMtxs[shardIdx].Unlock()
|
|
}
|
|
|
|
func (cb *chunkBuffer) get(ref ChunkDiskMapperRef) chunkenc.Chunk {
|
|
shardIdx := ref % inBufferShards
|
|
|
|
cb.inBufferChunksMtxs[shardIdx].RLock()
|
|
defer cb.inBufferChunksMtxs[shardIdx].RUnlock()
|
|
|
|
return cb.inBufferChunks[shardIdx][ref]
|
|
}
|
|
|
|
func (cb *chunkBuffer) clear() {
|
|
for i := 0; i < inBufferShards; i++ {
|
|
cb.inBufferChunksMtxs[i].Lock()
|
|
cb.inBufferChunks[i] = make(map[ChunkDiskMapperRef]chunkenc.Chunk)
|
|
cb.inBufferChunksMtxs[i].Unlock()
|
|
}
|
|
}
|