diff --git a/libavfilter/Makefile b/libavfilter/Makefile
index 9a12273fa1..277ff71d9e 100644
--- a/libavfilter/Makefile
+++ b/libavfilter/Makefile
@@ -222,6 +222,8 @@ OBJS-$(CONFIG_SHOWWAVES_FILTER)              += avf_showwaves.o
 OBJS-$(CONFIG_AMOVIE_FILTER)                 += src_movie.o
 OBJS-$(CONFIG_MOVIE_FILTER)                  += src_movie.o
 
+SKIPHEADERS-$(CONFIG_OPENCL)                 += deshake_kernel.h
+
 TOOLS     = graph2dot
 TESTPROGS = drawutils filtfmts formats
 
diff --git a/libavutil/Makefile b/libavutil/Makefile
index 92dea3b1ab..04dcdbbe1b 100644
--- a/libavutil/Makefile
+++ b/libavutil/Makefile
@@ -117,6 +117,7 @@ SKIPHEADERS          = old_pix_fmts.h
 SKIPHEADERS-$(HAVE_ATOMICS_SUNCC)      += atomic_suncc.h
 SKIPHEADERS-$(HAVE_ATOMICS_WIN32)      += atomic_win32.h
 SKIPHEADERS-$(HAVE_ATOMICS_GCC)        += atomic_gcc.h
+SKIPHEADERS-$(CONFIG_OPENCL)           += opencl.h
 
 TESTPROGS = adler32                                                     \
             aes                                                         \